Package index
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tidymatrix() - Create a tidymatrix object
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is_tidymatrix() - Check if an object is a tidymatrix
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validate_tidymatrix() - Validate a tidymatrix object
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print(<tidymatrix>) - Print a tidymatrix object
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activate() - Activate different components of a tidymatrix
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active() - Get the active component of a tidymatrix
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pull_active() - Extract the active component from a tidymatrix
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filter(<tidymatrix>) - Filter rows or columns of a tidymatrix
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select(<tidymatrix>) - Select columns from row or column metadata
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mutate(<tidymatrix>) - Mutate the active component of a tidymatrix
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arrange(<tidymatrix>) - Arrange the active component of a tidymatrix
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rename(<tidymatrix>) - Rename columns in metadata
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relocate(<tidymatrix>) - Relocate columns in metadata
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pull(<tidymatrix>) - Extract a column from metadata as a vector
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slice(<tidymatrix>) - Slice rows or columns by position
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slice_head(<tidymatrix>)slice_tail(<tidymatrix>) - Select first or last rows/columns
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slice_sample(<tidymatrix>) - Select a random sample of rows/columns
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count(<tidymatrix>) - Count observations by group
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group_by(<tidymatrix>) - Group a tidymatrix by variables in metadata
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group_vars(<grouped_tidymatrix>) - Get grouping variable names
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groups(<grouped_tidymatrix>) - Get grouping variables
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is_grouped_tidymatrix() - Check if object is a grouped tidymatrix
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print(<grouped_tidymatrix>) - Print a grouped tidymatrix
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summarize(<grouped_tidymatrix>)summarise(<grouped_tidymatrix>) - Summarize grouped tidymatrix
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tally(<grouped_tidymatrix>) - Count observations in groups
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ungroup(<grouped_tidymatrix>) - Remove grouping from a grouped tidymatrix
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summarize_rows() - Summarize rows
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summarize_columns() - Summarize columns
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left_join(<tidymatrix>)right_join(<tidymatrix>)inner_join(<tidymatrix>)full_join(<tidymatrix>)semi_join(<tidymatrix>)anti_join(<tidymatrix>) - Join tidymatrix with another data frame
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matrix-operations - Matrix Operations for tidymatrix
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transform_matrix() - Apply a function to the matrix
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center() - Center the active dimension of an object
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center(<tidymatrix>) - Center rows or columns
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scale(<tidymatrix>) - Scale rows or columns
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log_transform() - Log transform matrix
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clip_values() - Clip matrix values
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t(<tidymatrix>) - Transpose a tidymatrix
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get_matrix_fn_suggestions() - Get suggestions for matrix aggregation functions
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compute_across() - Apply a function across matrix dimensions with metadata access
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add_stats() - Add statistics to metadata
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compute_ttest() - Convenience wrapper for t-tests
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compute_wilcox() - Convenience wrapper for Wilcoxon rank-sum test
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compute_anova() - Convenience wrapper for ANOVA
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compute_kruskal() - Convenience wrapper for Kruskal-Wallis test
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compute_lm() - Convenience wrapper for linear models
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compute_lm_simple() - Convenience wrapper for simple linear regression
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compute_correlation() - Convenience wrapper for correlation tests
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compute_prcomp() - Compute PCA on tidymatrix
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compute_mds() - Compute MDS on tidymatrix
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compute_tsne() - Compute t-SNE on tidymatrix
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compute_umap() - Compute UMAP on tidymatrix
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compute_hclust() - Compute hierarchical clustering on tidymatrix
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compute_kmeans() - Compute k-means clustering on tidymatrix
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analysis-management - Analysis Management for tidymatrix
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store_analysis() - Store an analysis object
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get_analysis() - Get stored analysis object
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list_analyses() - List stored analyses
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remove_analysis() - Remove stored analysis
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remove_all_analyses() - Remove all stored analyses
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check_analyses() - Check analysis validity
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plot_pheatmap() - Create a pheatmap from tidymatrix
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to_long() - Convert tidymatrix to long-format data.frame
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as_tibble(<tidymatrix>) - Convert tidymatrix metadata to tibble
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as.data.frame(<tidymatrix>) - Convert tidymatrix metadata to data.frame
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big5_responsesbig5_respondentsbig5_items - Simulated Big Five personality survey
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big5_countries - Country information for the Big Five survey